Three Cheese Manicotti Recipe

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This Three Cheese Manicotti recipe is a creamy, cheesy dish that’s perfect for weeknight dinners or special occasions. Stuffed with ricotta, mozzarella, and Parmesan, these pasta shells bake to bubbly perfection in a rich marinara sauce. It’s comfort food at its best, and you’ll want seconds (or thirds)!

Three cheese manicotti pasta in a glass dish, generously topped with tomato sauce, grated cheese, and fresh basil.
Three Cheese Manicotti. Photo Credit: My Reliable Recipes

Manicotti is one of my favorite go-to recipes when I want something hearty but also easy to prepare. The filling is packed with flavor, the cheese is irresistibly melty, and it pairs wonderfully with a crisp salad or garlic bread. It’s great for any time of year and freezes beautifully, so you can have homemade goodness ready in a snap. What’s not to love?

Ingredients You’ll Need

You’ll need all the ingredients in the photograph below.

Ingredients for a Three Cheese Manicotti dish are artfully arranged on the countertop, featuring manicotti pasta, eggs, parmesan cheese, ricotta cheese, mozzarella cheese, spaghetti sauce, fresh basil, and an array of flavorful seasonings.
Three Cheese Manicotti Ingredients. Photo Credit: My Reliable Recipes

How to Make Three Cheese Manicotti

A complete printable recipe and the measurements in both US customary and metric are available in the recipe card below.

Making homemade manicotti is simple and fun. Here’s a step-by-step guide to bring this classic dish to life.

Prepare Your Baking Dish

Preheat the oven to 400°F (200°C). Spread 1 cup of tomato sauce evenly over the bottom of a 9×13” baking dish to prevent sticking.

Mix the Filling

In a large bowl, mix ricotta cheese, eggs, ½ cup Parmesan or Parmigiano Reggiano, mozzarella, salt, black pepper, garlic powder, onion powder, and parsley. Stir until smooth and creamy. Transfer this mixture to a piping bag or a sturdy zip-top bag with the tip snipped off.

A bowl containing mashed potatoes, three cheese blend reminiscent of a manicotti filling, egg yolks, and herbs rests on a speckled countertop.
Mix ricotta cheese, eggs, ½ cup Parmesan or Parmigiano Reggiano, mozzarella, salt, black pepper, garlic powder, onion powder, and parsley.
A bowl of creamy, textured Three Cheese Manicotti dip sits on a speckled countertop.
Stir until smooth and creamy.

Stuff the Manicotti

Carefully pipe the cheese filling into each uncooked manicotti shell. Be generous! Arrange them in a single layer in the baking dish.

A clear piping bag filled with a creamy, herb-infused mixture, perfect for stuffing into Three Cheese Manicotti, rests on a speckled surface.
Transfer this mixture to a piping bag or a sturdy zip-top bag with the tip snipped off.
Close-up of a hand holding a large pasta shell stuffed with a creamy white filling, reminiscent of Three Cheese Manicotti, with uncooked pasta in the background.
Carefully pipe the cheese filling into each uncooked manicotti shell.

Layer and Bake

Pour the remaining sauce over the shells, ensuring they’re fully covered. Cover the dish tightly with aluminum foil and bake for 45 minutes to 1 hour, or until the pasta is tender.

A glass baking dish with five uncooked cannelloni pasta tubes, reminiscent of Three Cheese Manicotti, filled with cheese and placed on a layer of rich tomato sauce.
Arrange them in a single layer in the baking dish.
A glass baking dish cradles a delectable Three Cheese Manicotti, each piece generously stuffed and smothered in rich tomato sauce.
Cover the dish tightly with aluminum foil and bake for 45 minutes to 1 hour.

Garnish and Serve

Remove the dish from the oven, sprinkle with fresh basil and the remaining Parmesan cheese, and let it rest for a few minutes. Serve it warm with garlic bread or a fresh salad on the side.

A glass baking dish brimming with Three Cheese Manicotti is topped with rich tomato sauce, grated cheese, and fresh basil. Nearby, uncooked pasta and ripe tomatoes await their turn in this mouthwatering creation.
Garnish with basil and Parmesan before serving.

Recipe Notes and Tips

Here are some helpful tips to make your Three Cheese Manicotti extra amazing:

  • Stuffing Made Easy: If you don’t have a piping bag, use a plastic sandwich bag with a corner cut off—it works like a charm!
  • Don’t Skip the Sauce: Make sure the pasta shells are completely covered in sauce so they soften perfectly in the oven. I used no-boil manicotti noodles for this recipe.
  • Mix It Up: Add cooked ground beef, Italian sausage, or spinach to the filling for different flavors and textures.
  • Herbs: Fresh basil or parsley on top takes this dish to another level.
  • Make Ahead: Assemble the manicotti, cover it tightly, and refrigerate for up to 24 hours before baking. It’s a lifesaver for busy days!

How to Store Leftover Three Cheese Manicotti

Let the manicotti cool completely, then transfer it to an airtight container. Refrigerate for up to 3 days or freeze for up to 3 months. When freezing, wrap the dish tightly in plastic wrap and foil to prevent freezer burn. To reheat, thaw in the fridge overnight, then warm in the oven at 350°F (175°C) until heated through.

What to Serve With Three Cheese Manicotti

This dish pairs beautifully with simple sides. A fresh Waldorf salad, buttery garlic bread, or roasted vegetables are perfect companions. For a full Italian-inspired meal, finish with tiramisu or a scoop of gelato!

A glass baking dish holds Three Cheese Manicotti enveloped in rich red tomato sauce, sprinkled with grated cheese and adorned with fresh basil leaves.
Three Cheese Manicotti. Photo Credit: My Reliable Recipes

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Three cheese manicotti pasta in a glass dish, generously topped with tomato sauce, grated cheese, and fresh basil.

Three Cheese Manicotti

Mandy I My Reliable Recipes
This Three Cheese Manicotti recipe is a creamy, cheesy dish that's perfect for weeknight dinners or special occasions. Stuffed with ricotta, mozzarella, and Parmesan, these pasta shells bake to bubbly perfection in a rich marinara sauce. It's comfort food at its best, and you’ll want seconds (or thirds)!
No ratings yet
Prep Time 20 minutes
Cook Time 45 minutes
Total Time 1 hour 5 minutes
Course Main Course
Cuisine Italian
Servings 4
Calories 569 kcal

Ingredients
 
 

  • 4 to 5 ounces manicotti pasta uncooked
  • 3 cups spaghetti sauce
  • 2 large eggs
  • 1 teaspoon salt
  • 1 teaspoon pepper
  • ½ tablespoon dried parsley
  • ¾ cup Parmesan cheese shredded
  • 1 cup mozzarella shredded
  • 2 cups ricotta cheese
  • 1 tablespoon garlic powder
  • 1 tablespoon onion powder
  • 2 tablespoons fresh basil

Instructions
 

  • Preheat the oven to 400°F (200°C).
  • Spread 1 cup of spaghetti sauce over the bottom of a 9×13” baking dish.
    3 cups spaghetti sauce
  • In a bowl, combine the ricotta, eggs, ½ cup of Parmesan, mozzarella, salt, pepper, garlic powder, onion powder, and dried parsley. Transfer the mixture to a piping bag or a storage bag with the tip cut off.
    2 large eggs, 1 teaspoon salt, 1 teaspoon pepper, ¾ cup Parmesan cheese, 1 cup mozzarella, 2 cups ricotta cheese, 1 tablespoon garlic powder, 1 tablespoon onion powder, ½ tablespoon dried parsley
  • Pipe the cheese mixture into each manicotti shell until full. Arrange the stuffed shells in a single layer in the baking dish.
    4 to 5 ounces manicotti pasta
  • Pour the remaining spaghetti sauce evenly over the manicotti. Cover the dish tightly with aluminum foil.
  • Bake for 45 minutes to 1 hour, or until the manicotti shells are softened.
  • Remove from the oven and sprinkle fresh chopped basil and remaining parmesan cheese on top. Serve and enjoy!
    2 tablespoons fresh basil

Notes

  • Stuffing Made Easy: If you don’t have a piping bag, use a plastic sandwich bag with a corner cut off—it works like a charm!
  • Don’t Skip the Sauce: Make sure the pasta shells are completely covered in sauce so they soften perfectly in the oven. I used no-boil manicotti noodles for this recipe.
  • Mix It Up: Add cooked ground beef, Italian sausage, or spinach to the filling for different flavors and textures.
  • Herbs: Fresh basil or parsley on top takes this dish to another level.
  • Make Ahead: Assemble the manicotti, cover it tightly, and refrigerate for up to 24 hours before baking. It’s a lifesaver for busy days!

Storage and Reheating Instructions

  • Fridge: Let the manicotti cool completely, then transfer it to an airtight container. Refrigerate for up to 3 days.
  • Freeze: Freeze for up to 3 months. When freezing, wrap the dish tightly in plastic wrap and foil to prevent freezer burn.
  • Reheat: To reheat, thaw in the fridge overnight, then warm in the oven at 350°F (175°C) until heated through.

Nutrition

Calories: 569kcalCarbohydrates: 39gProtein: 36gFat: 30gSaturated Fat: 18gPolyunsaturated Fat: 2gMonounsaturated Fat: 9gTrans Fat: 0.01gCholesterol: 180mgSodium: 2069mgPotassium: 866mgFiber: 4gSugar: 8gVitamin A: 1862IUVitamin C: 14mgCalcium: 680mgIron: 4mg
Keyword three cheese manicotti
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